Welcome to SNAPPY’s documentation!

SNAPPY is a Python program used to assign Y-chromosome phylogeny-informed haplogroups using dense genotype data. SNAPPY’s reference library is pulled from the ISOGG database.

Check out the Usage section for further information, including how to Installation: the project.

Note

This project is under active development.

Contents

• Usage
  • Quick Start:
  • Installation:
• Software Description
  • Algorithm summary:
  • Required input files:
  • Output files:
  • Reference File Sources:
  • Dependencies:
• Advanced Usage:
  • Parameters:
• Auxiliary Tools:
  • Creating Custom Reference Libraries:
  • Instructions on Uninstalling SNAPPY:
• Notes and Considerations:
• Citation:
• Terms of Use:
• Potential New Features: